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LOC123018342 collectin-46-like [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123018342, updated on 22-Oct-2023

Summary

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Gene symbol
LOC123018342
Gene description
collectin-46-like
Locus tag
EYD10_06554
See related
Ensembl:ENSVKKG00000008353
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Also known as
Pol_7
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Genomic context

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See LOC123018342 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335317.1 (6817154..6822697)

NW_025335317.1Genomic Context describing neighboring genes Neighboring gene pulmonary surfactant-associated protein D-like Neighboring gene uncharacterized LOC123018339 Neighboring gene pulmonary surfactant-associated protein D-like Neighboring gene pulmonary surfactant-associated protein A-like Neighboring gene pulmonary surfactant-associated protein A-like Neighboring gene methionine adenosyltransferase 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335317 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in surfactant homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-46-like
Names
LINE-1 retrotransposable element ORF2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335317.1 Reference ASM479886v1

    Range
    6817154..6822697
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044420326.1 → XP_044276261.1  collectin-46-like

    UniProtKB/TrEMBL
    A0A8D2KVX1
    Conserved Domains (1) summary
    cl02432
    Location:144 → 244
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_044420325.1 → XP_044276260.1  collectin-46-like

    UniProtKB/TrEMBL
    A0A8D2KVX1
    Related
    ENSVKKP00000012011.1, ENSVKKT00000012295.1
    Conserved Domains (1) summary
    cl02432
    Location:144 → 244
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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