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rnf14 ring finger protein 14 [ Thunnus albacares (yellowfin tuna) ]

Gene ID: 122995590, updated on 22-Mar-2024

Summary

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Gene symbol
rnf14
Gene description
ring finger protein 14
See related
EnsemblRapid:ENSTABG00005026092
Gene type
protein coding
RefSeq status
MODEL
Organism
Thunnus albacares
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Thunnus
Orthologs
human zebrafish all
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Genomic context

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See rnf14 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fThuAlb1.1 (GCF_914725855.1) 13 NC_058118.1 (18949057..18956624, complement)

Chromosome 13 - NC_058118.1Genomic Context describing neighboring genes Neighboring gene NEDD4 family-interacting protein 1-like Neighboring gene endonuclease, polyU-specific 2 Neighboring gene heat shock protein 4a Neighboring gene zinc finger, CCHC domain containing 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058118.1 Chromosome 13 Reference fThuAlb1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitutions in the Glycogenin-1 Gene Are Associated with the Evolution of Endothermy in Sharks and Tunas. Ciezarek AG, et al. Genome Biol Evol, 2016 Oct 5. PMID 27614233, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thunnus albacares Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fThuAlb1.1

Genomic

  1. NC_058118.1 Reference fThuAlb1.1

    Range
    18949057..18956624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044370899.1 → XP_044226834.1  E3 ubiquitin-protein ligase RNF14

    Conserved Domains (4) summary
    smart00591
    Location:11 → 129
    RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
    smart00647
    Location:297 → 358
    IBR; In Between Ring fingers
    cd16628
    Location:226 → 278
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins
    cl19760
    Location:397 → 442
    IBR; IBR domain, a half RING-finger domain

  2. XM_044370900.1 → XP_044226835.1  E3 ubiquitin-protein ligase RNF14

    Related
    ENSTABP00005060175.1, ENSTABT00005063514.1
    Conserved Domains (4) summary
    smart00591
    Location:11 → 129
    RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
    smart00647
    Location:297 → 358
    IBR; In Between Ring fingers
    cd16628
    Location:226 → 278
    RING-HC_RBR_RNF14; RING finger, HC subclass, found in RING finger protein 14 (RNF14) and similar proteins
    cl19760
    Location:397 → 442
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

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