U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ASPH aspartate beta-hydroxylase [ Bufo gargarizans (Asiatic toad) ]

Gene ID: 122939107, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
See related
EnsemblRapid:ENSBGGG00000015920
Gene type
protein coding
RefSeq status
MODEL
Organism
Bufo gargarizans
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ASPH in Genome Data Viewer
Location:
chromosome: 5
Exon count:
31
Annotation release Status Assembly Chr Location
100 current ASM1485885v1 (GCF_014858855.1) 5 NC_058084.1 (110185861..110407918)

Chromosome 5 - NC_058084.1Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl hydrolase Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene clavesin 1 Neighboring gene epidermal retinol dehydrogenase 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_058084.1 Chromosome 5 Reference ASM1485885v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bufo gargarizans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485885v1 Primary Assembly

Genomic

  1. NC_058084.1 Reference ASM1485885v1 Primary Assembly

    Range
    110185861..110407918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044295090.1 → XP_044151025.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Related
    ENSBGGP00000021060.1, ENSBGGT00000023363.1
    Conserved Domains (5) summary
    TIGR02795
    Location:475 → 585
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:19 → 271
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:197 → 450
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:555 → 581
    TPR; TPR repeat [structural motif]
    cl40423
    Location:723 → 882
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_044295092.1 → XP_044151027.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Related
    ENSBGGP00000021408.1, ENSBGGT00000023746.1
    Conserved Domains (2) summary
    pfam05279
    Location:19 → 271
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:197 → 448
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  3. XM_044295093.1 → XP_044151028.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (1) summary
    pfam05279
    Location:19 → 162
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_044295095.1 → XP_044151030.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (1) summary
    pfam05279
    Location:19 → 148
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_044295091.1 → XP_044151026.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Related
    ENSBGGP00000021738.1, ENSBGGT00000024105.1
    Conserved Domains (5) summary
    TIGR02795
    Location:474 → 584
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:18 → 270
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:196 → 449
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    sd00006
    Location:554 → 580
    TPR; TPR repeat [structural motif]
    cl40423
    Location:722 → 881
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.