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PKD1L2 polycystin-1-like protein 2 [ Bufo gargarizans (Asiatic toad) ]

Gene ID: 122920088, updated on 22-Mar-2024

Summary

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Gene symbol
PKD1L2
Gene description
polycystin-1-like protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Bufo gargarizans
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Bufonidae; Bufo
Orthologs
human all
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Genomic context

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See PKD1L2 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
44
Annotation release Status Assembly Chr Location
100 current ASM1485885v1 (GCF_014858855.1) 10 NC_058089.1 (99477956..99577256)

Chromosome 10 - NC_058089.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 93 Neighboring gene beta-carotene oxygenase 1 Neighboring gene glycine cleavage system protein H Neighboring gene protein phosphatase 1 regulatory subunit 3E-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058089.1 Chromosome 10 Reference ASM1485885v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystic kidney disease protein 1-like 2
Names
polycystin 1 like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bufo gargarizans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1485885v1 Primary Assembly

Genomic

  1. NC_058089.1 Reference ASM1485885v1 Primary Assembly

    Range
    99477956..99577256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044269298.1 → XP_044125233.1  polycystic kidney disease protein 1-like 2

    Conserved Domains (5) summary
    cd00037
    Location:35 → 152
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    PLN03223
    Location:2109 → 2422
    PLN03223; Polycystin cation channel protein; Provisional
    cd01752
    Location:1381 → 1500
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    pfam02010
    Location:572 → 902
    REJ; REJ domain
    cl02559
    Location:1269 → 1310
    GPS; GPCR proteolysis site, GPS, motif
Nucleotide Protein
Heading Accession and Version

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