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ASB3 ankyrin repeat and SOCS box containing 3 [ Neogale vison (American mink) ]

Gene ID: 122916474, updated on 22-Mar-2024

Summary

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Gene symbol
ASB3
Gene description
ankyrin repeat and SOCS box containing 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Neogale vison
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale
Also known as
G8JLA9
Orthologs
human mouse all
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Genomic context

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See ASB3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM_NN_V1 (GCF_020171115.1) 8 NC_058098.1 (76516309..76626607, complement)

Chromosome 8 - NC_058098.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene 60S ribosomal protein L17-like Neighboring gene small nucleolar RNA SNORA70 Neighboring gene ChaC glutathione specific gamma-glutamylcyclotransferase 2 Neighboring gene endoplasmic reticulum lectin 1 Neighboring gene G protein-coupled receptor 75

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058098.1 Chromosome 8 Reference ASM_NN_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SOCS box protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neovison vison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM_NN_V1 Primary Assembly

Genomic

  1. NC_058098.1 Reference ASM_NN_V1 Primary Assembly

    Range
    76516309..76626607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044263941.1 → XP_044119876.1  ankyrin repeat and SOCS box protein 3 isoform X2

    UniProtKB/TrEMBL
    U6DHK2
    Conserved Domains (4) summary
    PHA03095
    Location:49 → 369
    PHA03095; ankyrin-like protein; Provisional
    cd03722
    Location:457 → 507
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:146 → 176
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:17 → 63
    Ank_4; Ankyrin repeats (many copies)

  2. XM_044263940.1 → XP_044119875.1  ankyrin repeat and SOCS box protein 3 isoform X1

    UniProtKB/TrEMBL
    U6DHK2
    Conserved Domains (3) summary
    cd03722
    Location:459 → 509
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:146 → 176
    ANK; ANK repeat [structural motif]
    cl39094
    Location:22 → 237
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_044263944.1 → XP_044119879.1  ankyrin repeat and SOCS box protein 3 isoform X2

    UniProtKB/TrEMBL
    U6DHK2
    Conserved Domains (4) summary
    PHA03095
    Location:49 → 369
    PHA03095; ankyrin-like protein; Provisional
    cd03722
    Location:457 → 507
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:146 → 176
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:17 → 63
    Ank_4; Ankyrin repeats (many copies)

  4. XM_044263943.1 → XP_044119878.1  ankyrin repeat and SOCS box protein 3 isoform X1

    UniProtKB/TrEMBL
    U6DHK2
    Conserved Domains (3) summary
    cd03722
    Location:459 → 509
    SOCS_ASB3; SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha ...
    sd00045
    Location:146 → 176
    ANK; ANK repeat [structural motif]
    cl39094
    Location:22 → 237
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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