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HCFC1 host cell factor C1 [ Neogale vison (American mink) ]

Gene ID: 122897437, updated on 22-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Neogale vison
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Neogale
Also known as
A6NEM2
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
27
Annotation release Status Assembly Chr Location
100 current ASM_NN_V1 (GCF_020171115.1) X NC_058105.1 (1497225..1520334)

Chromosome X - NC_058105.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene transmembrane protein 187 Neighboring gene renin binding protein Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058105.1 Chromosome X Reference ASM_NN_V1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1
Names
Host cell factor C1 (VP16-accessory protein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neovison vison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM_NN_V1 Primary Assembly

Genomic

  1. NC_058105.1 Reference ASM_NN_V1 Primary Assembly

    Range
    1497225..1520334
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044235679.1 → XP_044091614.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7EXK3
    Conserved Domains (5) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1902 → 1931
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_044235680.1 → XP_044091615.1  host cell factor 1 isoform X2

    Conserved Domains (5) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1901 → 1930
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_044235681.1 → XP_044091616.1  host cell factor 1 isoform X3

    Conserved Domains (5) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1901 → 1930
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_044235682.1 → XP_044091617.1  host cell factor 1 isoform X4

    Conserved Domains (5) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1858 → 1887
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  5. XM_044235684.1 → XP_044091619.1  host cell factor 1 isoform X6

    Conserved Domains (5) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1857 → 1886
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:441 → 771
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  6. XM_044235685.1 → XP_044091620.1  host cell factor 1 isoform X7

    Conserved Domains (4) summary
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1833 → 1862
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:377 → 763
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  7. XM_044235683.1 → XP_044091618.1  host cell factor 1 isoform X5

    Conserved Domains (3) summary
    PLN02193
    Location:22 → 278
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1858 → 1887
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:156 → 209
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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