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tlr18 toll-like receptor 18 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122881275, updated on 22-Mar-2024

Summary

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Gene symbol
tlr18
Gene description
toll-like receptor 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Also known as
TLR14
Orthologs
zebrafish all
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Genomic context

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See tlr18 in Genome Data Viewer
Location:
chromosome: LG9
Exon count:
6
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG9 NC_058050.1 (3474555..3499478, complement)

Linkage Group LG9 - NC_058050.1Genomic Context describing neighboring genes Neighboring gene ATG5 autophagy related 5 homolog (S. cerevisiae) Neighboring gene PR domain containing 1a, with ZNF domain Neighboring gene uncharacterized LOC122882281 Neighboring gene leucine rich repeat and Ig domain containing 4b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058050.1 Chromosome LG9 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058050.1 Reference ASM2008510v1 Primary Assembly

    Range
    3474555..3499478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044207279.1 → XP_044063214.1  toll-like receptor 18

    Conserved Domains (6) summary
    PRK15370
    Location:57 → 277
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00255
    Location:665 → 808
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:58 → 163
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd05025
    Location:876 → 965
    S-100A1; S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this ...
    sd00031
    Location:62 → 85
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:374 → 401
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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