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LOC122880368 toll-like receptor 2 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122880368, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122880368
Gene description
toll-like receptor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
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Genomic context

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See LOC122880368 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
3
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG8 NC_058049.1 (17058495..17061874, complement)

Linkage Group LG8 - NC_058049.1Genomic Context describing neighboring genes Neighboring gene SLC35A4 upstream open reading frame protein Neighboring gene kinesin-like protein klp-20 Neighboring gene solute carrier family 35 member A4 Neighboring gene CD74 molecule, major histocompatibility complex, class II invariant chain a Neighboring gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058049.1 Chromosome LG8 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipopolysaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipopolysaccharide-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of type II interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor 4 signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of lipopolysaccharide receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058049.1 Reference ASM2008510v1 Primary Assembly

    Range
    17058495..17061874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044205409.1 → XP_044061344.1  toll-like receptor 2 isoform X3

    Conserved Domains (2) summary
    PLN00113
    Location:197 → 312
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:201 → 224
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_044205407.1 → XP_044061342.1  toll-like receptor 2 isoform X1

    Conserved Domains (2) summary
    PRK15370
    Location:254 → 398
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:225 → 253
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_044205408.1 → XP_044061343.1  toll-like receptor 2 isoform X2

    Conserved Domains (2) summary
    PRK15370
    Location:208 → 352
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:179 → 207
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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