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zgc:92907 uncharacterized LOC122880088 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122880088, updated on 22-Mar-2024

Summary

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Gene symbol
zgc:92907
Gene description
uncharacterized LOC122880088
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
zebrafish all
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Genomic context

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See zgc:92907 in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
4
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG8 NC_058049.1 (13085253..13090578, complement)

Linkage Group LG8 - NC_058049.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like 3b Neighboring gene forkhead box O4 Neighboring gene sestrin 4 Neighboring gene RAP2C, member of RAS oncogene family Neighboring gene muscleblind-like splicing regulator 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058049.1 Chromosome LG8 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine transferase subunit ALG13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058049.1 Reference ASM2008510v1 Primary Assembly

    Range
    13085253..13090578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044204849.1 → XP_044060784.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog

    Conserved Domains (1) summary
    cl10013
    Location:4 → 146
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
Heading Accession and Version

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