U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

hs2st1b heparan sulfate 2-O-sulfotransferase 1b [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122877924, updated on 22-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
hs2st1b
Gene description
heparan sulfate 2-O-sulfotransferase 1b
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See hs2st1b in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
7
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG6 NC_058047.1 (26320994..26331491)

Linkage Group LG6 - NC_058047.1Genomic Context describing neighboring genes Neighboring gene SRY-box transcription factor 14 Neighboring gene claudin-18-like Neighboring gene LIM domain only 4b Neighboring gene uncharacterized LOC122877270

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_058047.1 Chromosome LG6 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
heparan sulfate 2-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058047.1 Reference ASM2008510v1 Primary Assembly

    Range
    26320994..26331491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044200118.1 → XP_044056053.1  heparan sulfate 2-O-sulfotransferase 1 isoform X2

  2. XM_044200117.1 → XP_044056052.1  heparan sulfate 2-O-sulfotransferase 1 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases