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LOC122876891 tight junction protein ZO-2-like [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122876891, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122876891
Gene description
tight junction protein ZO-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
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Genomic context

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See LOC122876891 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
24
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG5 NC_058046.1 (33012364..33125667, complement)

Linkage Group LG5 - NC_058046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122876227 Neighboring gene uncharacterized LOC122876209 Neighboring gene uncharacterized LOC122876892 Neighboring gene frataxin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058046.1 Chromosome LG5 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction protein ZO-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058046.1 Reference ASM2008510v1 Primary Assembly

    Range
    33012364..33125667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044197790.1 → XP_044053725.1  tight junction protein ZO-2-like isoform X1

    Conserved Domains (4) summary
    smart00072
    Location:667 → 845
    GuKc; Guanylate kinase homologues
    cd00992
    Location:32 → 117
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam17069
    Location:167 → 237
    RSRP; Arginine/Serine-Rich protein 1
    cl17036
    Location:568 → 633
    SH3; Src Homology 3 domain superfamily

  2. XM_044197791.1 → XP_044053726.1  tight junction protein ZO-2-like isoform X2

    Conserved Domains (4) summary
    smart00072
    Location:648 → 826
    GuKc; Guanylate kinase homologues
    cd00992
    Location:13 → 98
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam17069
    Location:148 → 218
    RSRP; Arginine/Serine-Rich protein 1
    cl17036
    Location:549 → 614
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

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