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ikbkb inhibitor of nuclear factor kappa B kinase subunit beta [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122875692, updated on 22-Mar-2024

Summary

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Gene symbol
ikbkb
Gene description
inhibitor of nuclear factor kappa B kinase subunit beta
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Also known as
IKKbeta
Orthologs
human zebrafish all
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Genomic context

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See ikbkb in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
22
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG5 NC_058046.1 (25205100..25226163, complement)

Linkage Group LG5 - NC_058046.1Genomic Context describing neighboring genes Neighboring gene polymerase (DNA directed), beta Neighboring gene enkurin domain containing 1 Neighboring gene voltage-dependent anion channel 3 Neighboring gene plasminogen activator, tissue Neighboring gene SH2 domain-containing protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058046.1 Chromosome LG5 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning of IKKβ from the mandarin fish Siniperca chuatsi and its up-regulation in cells by ISKNV infection. Chen WJ, et al. Vet Immunol Immunopathol, 2011 Jan. PMID 20817314
  2. Transcriptomic analysis of Mandarin fish brain cells infected with infectious spleen and kidney necrosis virus with an emphasis on retinoic acid-inducible gene 1-like receptors and apoptosis pathways. Hu X, et al. Fish Shellfish Immunol, 2015 Aug. PMID 25982401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables IkappaB kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of IkappaB kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inhibitor of nuclear factor kappa-B kinase subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058046.1 Reference ASM2008510v1 Primary Assembly

    Range
    25205100..25226163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044195074.1 → XP_044051009.1  inhibitor of nuclear factor kappa-B kinase subunit beta

    UniProtKB/TrEMBL
    E3T7Z9
    Conserved Domains (2) summary
    cl21453
    Location:20 → 310
    PKc_like; Protein Kinases, catalytic domain
    cl28922
    Location:311 → 391
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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