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chst6 carbohydrate sulfotransferase 6 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122875360, updated on 22-Mar-2024

Summary

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Gene symbol
chst6
Gene description
carbohydrate sulfotransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
zebrafish all
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Genomic context

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See chst6 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
3
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG4 NC_058045.1 (26198760..26212818)

Linkage Group LG4 - NC_058045.1Genomic Context describing neighboring genes Neighboring gene GABA(A) receptor-associated protein like 2 Neighboring gene transmembrane protein 231 Neighboring gene uncharacterized LOC122875364 Neighboring gene spire-type actin nucleation factor 2 Neighboring gene syntrophin, beta 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058045.1 Chromosome LG4 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058045.1 Reference ASM2008510v1 Primary Assembly

    Range
    26198760..26212818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044194347.1 → XP_044050282.1  carbohydrate sulfotransferase 6

  2. XM_044194346.1 → XP_044050281.1  carbohydrate sulfotransferase 6

  3. XM_044194345.1 → XP_044050280.1  carbohydrate sulfotransferase 6

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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