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irf7 interferon regulatory factor 7 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122874789, updated on 22-Mar-2024

Summary

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Gene symbol
irf7
Gene description
interferon regulatory factor 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
human zebrafish all
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Genomic context

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See irf7 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
10
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG4 NC_058045.1 (17782856..17789007)

Linkage Group LG4 - NC_058045.1Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor class A domain containing 3 Neighboring gene uncharacterized LOC122874442 Neighboring gene achaete-scute family bHLH transcription factor 1b Neighboring gene uncharacterized LOC122874955 Neighboring gene PHD and ring finger domains 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058045.1 Chromosome LG4 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure and transcription of IRF-1 and IRF-7 in the mandarin fish Siniperca chuatsi. Sun BJ, et al. Vet Immunol Immunopathol, 2007 Mar 15. PMID 17289159
  2. Composition and transcription of all interferon regulatory factors (IRFs), IRF1‒11 in a perciform fish, the mandarin fish, Siniperca chuatsi. Laghari ZA, et al. Dev Comp Immunol, 2018 Apr. PMID 29180032

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058045.1 Reference ASM2008510v1 Primary Assembly

    Range
    17782856..17789007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044193141.1 → XP_044049076.1  interferon regulatory factor 7 isoform X1

    UniProtKB/TrEMBL
    A0A2L1DGN5
    Conserved Domains (1) summary
    cd00103
    Location:6 → 107
    IRF; Interferon Regulatory Factor (IRF); also known as tryptophan pentad repeat. The family of IRF transcription factors is important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. The ...

  2. XM_044193142.1 → XP_044049077.1  interferon regulatory factor 7 isoform X2

    UniProtKB/TrEMBL
    Q2VWH4
    Conserved Domains (1) summary
    cl00096
    Location:2 → 54
    IRF; Interferon Regulatory Factor (IRF); also known as tryptophan pentad repeat. The family of IRF transcription factors is important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. The ...
Nucleotide Protein
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