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LOC122874079 toll-like receptor 2 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122874079, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122874079
Gene description
toll-like receptor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
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Genomic context

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See LOC122874079 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
1
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG3 NC_058044.1 (8848254..8849801, complement)

Linkage Group LG3 - NC_058044.1Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase family A, member 2 Neighboring gene protein PERCC1 Neighboring gene toll-like receptor 2 type-1 Neighboring gene transmembrane 131 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058044.1 Chromosome LG3 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: toll-like receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058044.1 Reference ASM2008510v1 Primary Assembly

    Range
    8848254..8849801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044191628.1 → XP_044047563.1  LOW QUALITY PROTEIN: toll-like receptor 2

    Conserved Domains (3) summary
    PRK15370
    Location:11 → 132
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    smart00255
    Location:261 → 404
    TIR; Toll - interleukin 1 - resistance
    sd00033
    Location:12 → 35
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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