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LOC122873443 E3 ubiquitin/ISG15 ligase TRIM25-like [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122873443, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122873443
Gene description
E3 ubiquitin/ISG15 ligase TRIM25-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
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Genomic context

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See LOC122873443 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
9
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG3 NC_058044.1 (4772498..4786499, complement)

Linkage Group LG3 - NC_058044.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 1 Neighboring gene mannosidase, alpha, class 2B, member 1 Neighboring gene MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase Neighboring gene extracellular leucine-rich repeat and fibronectin type III domain containing 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058044.1 Chromosome LG3 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin/ISG15 ligase TRIM25-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058044.1 Reference ASM2008510v1 Primary Assembly

    Range
    4772498..4786499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044190139.1 → XP_044046074.1  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X2

    Conserved Domains (4) summary
    COG0419
    Location:178 → 297
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd19802
    Location:99 → 143
    Bbox1_TRIM8-like; B-box-type 1 zinc finger found in tripartite motif-containing proteins, TRIM8, TRIM16, TRIM25, TRIM29, TRIM44, TRIM47 and similar proteins
    cl02614
    Location:419 → 598
    SPRY; SPRY domain
    cl17238
    Location:15 → 57
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_044190141.1 → XP_044046076.1  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X4

    Conserved Domains (4) summary
    COG0419
    Location:178 → 297
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd19802
    Location:99 → 143
    Bbox1_TRIM8-like; B-box-type 1 zinc finger found in tripartite motif-containing proteins, TRIM8, TRIM16, TRIM25, TRIM29, TRIM44, TRIM47 and similar proteins
    cl02614
    Location:392 → 571
    SPRY; SPRY domain
    cl17238
    Location:15 → 57
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. XM_044190138.1 → XP_044046073.1  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1

    Conserved Domains (4) summary
    COG0419
    Location:178 → 297
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd19802
    Location:99 → 143
    Bbox1_TRIM8-like; B-box-type 1 zinc finger found in tripartite motif-containing proteins, TRIM8, TRIM16, TRIM25, TRIM29, TRIM44, TRIM47 and similar proteins
    cl02614
    Location:420 → 599
    SPRY; SPRY domain
    cl17238
    Location:15 → 57
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  4. XM_044190140.1 → XP_044046075.1  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X3

    Conserved Domains (4) summary
    COG0419
    Location:178 → 297
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    cd19802
    Location:99 → 143
    Bbox1_TRIM8-like; B-box-type 1 zinc finger found in tripartite motif-containing proteins, TRIM8, TRIM16, TRIM25, TRIM29, TRIM44, TRIM47 and similar proteins
    cl02614
    Location:393 → 572
    SPRY; SPRY domain
    cl17238
    Location:15 → 57
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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