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pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122873361, updated on 22-Mar-2024

Summary

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Gene symbol
pin1
Gene description
peptidylprolyl cis/trans isomerase, NIMA-interacting 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
human zebrafish all
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Genomic context

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See pin1 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
5
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG3 NC_058044.1 (7758832..7764626)

Linkage Group LG3 - NC_058044.1Genomic Context describing neighboring genes Neighboring gene proto-oncogene vav-like Neighboring gene ubiquitin like 5 Neighboring gene perforin-1-like Neighboring gene uncharacterized LOC122873365 Neighboring gene uncharacterized LOC122873366

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058044.1 Chromosome LG3 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058044.1 Reference ASM2008510v1 Primary Assembly

    Range
    7758832..7764626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044189988.1 → XP_044045923.1  peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

    Conserved Domains (2) summary
    PTZ00356
    Location:44 → 156
    PTZ00356; peptidyl-prolyl cis-trans isomerase (PPIase); Provisional
    cd00201
    Location:8 → 39
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
Nucleotide Protein
Heading Accession and Version

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