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LOC122872611 E3 ubiquitin/ISG15 ligase TRIM25-like [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122872611, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122872611
Gene description
E3 ubiquitin/ISG15 ligase TRIM25-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
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Genomic context

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See LOC122872611 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
11
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG3 NC_058044.1 (28607929..28624846, complement)

Linkage Group LG3 - NC_058044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122872680 Neighboring gene linkage group 3 C17orf67 homolog Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene diacylglycerol kinase, epsilon Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25-like Neighboring gene uncharacterized LOC122872688 Neighboring gene RAS protein activator like 3 Neighboring gene SEC14-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058044.1 Chromosome LG3 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: E3 ubiquitin/ISG15 ligase TRIM25-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058044.1 Reference ASM2008510v1 Primary Assembly

    Range
    28607929..28624846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044188738.1 → XP_044044673.1  LOW QUALITY PROTEIN: E3 ubiquitin/ISG15 ligase TRIM25-like

    Conserved Domains (6) summary
    TIGR00599
    Location:10 → 103
    rad18; DNA repair protein rad18
    cd19776
    Location:154 → 191
    Bbox2_TRIM25_C-IV; B-box-type 2 zinc finger found in tripartite motif-containing protein 25 (TRIM25) and similar proteins
    cl21509
    Location:180 → 319
    ApoLp-III_like; Apolipophorin-III and similar insect proteins
    cl00034
    Location:105 → 151
    Bbox_SF; B-box-type zinc finger superfamily
    cl02614
    Location:504 → 672
    SPRY; SPRY domain
    cl17238
    Location:18 → 58
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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