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ddx3xb DEAD-box helicase 3 X-linked b [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122872051, updated on 22-Mar-2024

Summary

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Gene symbol
ddx3xb
Gene description
DEAD-box helicase 3 X-linked b
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
zebrafish all
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Genomic context

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See ddx3xb in Genome Data Viewer
Location:
chromosome: LG24
Exon count:
21
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG24 NC_058065.1 (8923608..8945497)

Linkage Group LG24 - NC_058065.1Genomic Context describing neighboring genes Neighboring gene prostaglandin F2 receptor inhibitor b Neighboring gene solute carrier family 5 member 3a Neighboring gene dTDP-D-glucose 4,6-dehydratase-like Neighboring gene G protein-coupled receptor 180

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058065.1 Chromosome LG24 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamete generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DEAD-box helicase 3 X-linked b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058065.1 Reference ASM2008510v1 Primary Assembly

    Range
    8923608..8945497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044187714.1 → XP_044043649.1  DEAD-box helicase 3 X-linked b isoform X1

    Conserved Domains (2) summary
    cd18787
    Location:493 → 640
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:234 → 488
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  2. XM_044187715.1 → XP_044043650.1  DEAD-box helicase 3 X-linked b isoform X2

    Conserved Domains (2) summary
    cd18787
    Location:492 → 639
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:233 → 487
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  3. XM_044187720.1 → XP_044043655.1  DEAD-box helicase 3 X-linked b isoform X6

    Conserved Domains (2) summary
    cd18787
    Location:493 → 623
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:234 → 488
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  4. XM_044187717.1 → XP_044043652.1  DEAD-box helicase 3 X-linked b isoform X3

    Conserved Domains (2) summary
    cd18787
    Location:482 → 629
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:223 → 477
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  5. XM_044187718.1 → XP_044043653.1  DEAD-box helicase 3 X-linked b isoform X4

    Conserved Domains (2) summary
    cd18787
    Location:481 → 628
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:222 → 476
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  6. XM_044187723.1 → XP_044043658.1  DEAD-box helicase 3 X-linked b isoform X9

    Conserved Domains (2) summary
    cd18787
    Location:465 → 612
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:206 → 460
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  7. XM_044187722.1 → XP_044043657.1  DEAD-box helicase 3 X-linked b isoform X8

    Conserved Domains (2) summary
    cd18787
    Location:482 → 612
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:223 → 477
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  8. XM_044187719.1 → XP_044043654.1  DEAD-box helicase 3 X-linked b isoform X5

    Conserved Domains (2) summary
    cd18787
    Location:477 → 624
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:218 → 472
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  9. XM_044187721.1 → XP_044043656.1  DEAD-box helicase 3 X-linked b isoform X7

    Conserved Domains (2) summary
    cd18787
    Location:476 → 623
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:217 → 471
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  10. XM_044187725.1 → XP_044043660.1  DEAD-box helicase 3 X-linked b isoform X11

    Conserved Domains (2) summary
    cd18787
    Location:457 → 604
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:198 → 452
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  11. XM_044187724.1 → XP_044043659.1  DEAD-box helicase 3 X-linked b isoform X10

    Conserved Domains (2) summary
    cd18787
    Location:476 → 606
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:217 → 471
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3

  12. XM_044187726.1 → XP_044043661.1  DEAD-box helicase 3 X-linked b isoform X12

    Conserved Domains (2) summary
    cd18787
    Location:465 → 595
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18051
    Location:206 → 460
    DEADc_DDX3; DEAD-box helicase domain of DEAD box protein 3
Nucleotide Protein
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