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tab1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122871523, updated on 22-Mar-2024

Summary

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Gene symbol
tab1
Gene description
TGF-beta activated kinase 1/MAP3K7 binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
human zebrafish all
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Genomic context

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See tab1 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
11
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG3 NC_058044.1 (5833850..5852681)

Linkage Group LG3 - NC_058044.1Genomic Context describing neighboring genes Neighboring gene synaptogyrin-1-like Neighboring gene intraflagellar transport 27 homolog (Chlamydomonas) Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase b Neighboring gene uncharacterized LOC122871575 Neighboring gene C1q and TNF related 6b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058044.1 Chromosome LG3 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TGF-beta-activated kinase 1 and MAP3K7-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058044.1 Reference ASM2008510v1 Primary Assembly

    Range
    5833850..5852681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044186731.1 → XP_044042666.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X1

    Conserved Domains (1) summary
    cd00143
    Location:34 → 342
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...

  2. XM_044186738.1 → XP_044042673.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 1 isoform X2

    Conserved Domains (1) summary
    cd00143
    Location:34 → 342
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
Nucleotide Protein
Heading Accession and Version

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