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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122871166, updated on 22-Mar-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: LG23
Exon count:
19
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG23 NC_058064.1 (20557623..20720142)

Linkage Group LG23 - NC_058064.1Genomic Context describing neighboring genes Neighboring gene importin 8 Neighboring gene uncharacterized LOC122871168 Neighboring gene uncharacterized LOC122871167 Neighboring gene G2/M phase-specific E3 ubiquitin-protein ligase-like Neighboring gene G-protein coupled receptor 22-like Neighboring gene component of oligomeric golgi complex 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058064.1 Chromosome LG23 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058064.1 Reference ASM2008510v1 Primary Assembly

    Range
    20557623..20720142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044185918.1 → XP_044041853.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Conserved Domains (2) summary
    TIGR02917
    Location:471 → 857
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]

  2. XM_044185919.1 → XP_044041854.1  protein O-mannosyl-transferase TMTC1 isoform X2

    Conserved Domains (2) summary
    TIGR02917
    Location:460 → 859
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:474 → 502
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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