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rela v-rel avian reticuloendotheliosis viral oncogene homolog A [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122870615, updated on 22-Mar-2024

Summary

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Gene symbol
rela
Gene description
v-rel avian reticuloendotheliosis viral oncogene homolog A
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
zebrafish all
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Genomic context

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See rela in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
12
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG22 NC_058063.1 (4838674..4865559)

Linkage Group LG22 - NC_058063.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene equilibrative nucleoside transporter 2 Neighboring gene serine/threonine-protein phosphatase PP1-beta catalytic subunit Neighboring gene linkage group 22 C11orf68 homolog Neighboring gene DR1-associated protein 1 (negative cofactor 2 alpha)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058063.1 Chromosome LG22 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The alpha inhibitor of NF-kappaB (IkappaBalpha) from the mandarin fish binds with p65 NF-kappaB. Wang L, et al. Fish Shellfish Immunol, 2009 Mar. PMID 19340946
  2. Transcriptomic analysis of Mandarin fish brain cells infected with infectious spleen and kidney necrosis virus with an emphasis on retinoic acid-inducible gene 1-like receptors and apoptosis pathways. Hu X, et al. Fish Shellfish Immunol, 2015 Aug. PMID 25982401
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor p65
Names
P65 transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058063.1 Reference ASM2008510v1 Primary Assembly

    Range
    4838674..4865559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044184929.1 → XP_044040864.1  transcription factor p65 isoform X2

    UniProtKB/TrEMBL
    A0A0G2TCR7
    Conserved Domains (2) summary
    cd01177
    Location:195 → 291
    IPT_NFkappaB; IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to ...
    cl08275
    Location:20 → 188
    RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)

  2. XM_044184928.1 → XP_044040863.1  transcription factor p65 isoform X1

    UniProtKB/TrEMBL
    A0A0G2TCR7
    Conserved Domains (2) summary
    cd01177
    Location:195 → 291
    IPT_NFkappaB; IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to ...
    cl08275
    Location:20 → 188
    RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)

  3. XM_044184930.1 → XP_044040865.1  transcription factor p65 isoform X3

    UniProtKB/TrEMBL
    A0A0G2TCR7
    Conserved Domains (2) summary
    cd01177
    Location:163 → 259
    IPT_NFkappaB; IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to ...
    cl08275
    Location:1 → 156
    RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)
Nucleotide Protein
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