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LOC122870109 toll-like receptor 2 type-2 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122870109, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122870109
Gene description
toll-like receptor 2 type-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Also known as
TLR2a
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Genomic context

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See LOC122870109 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
12
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG22 NC_058063.1 (22222854..22238052, complement)

Linkage Group LG22 - NC_058063.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 175 Neighboring gene uncharacterized LOC122870707 Neighboring gene ladderlectin-like Neighboring gene fibrinogen alpha chain-like Neighboring gene fibrinogen beta chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058063.1 Chromosome LG22 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2 type-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058063.1 Reference ASM2008510v1 Primary Assembly

    Range
    22222854..22238052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044183902.1 → XP_044039837.1  toll-like receptor 2 type-2

    Conserved Domains (4) summary
    smart00255
    Location:653 → 808
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:320 → 551
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:362 → 390
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:38 → 381
    internalin_A; class 1 internalin InlA
Nucleotide Protein
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Molecular Biology Databases