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dhx58 DEXH (Asp-Glu-X-His) box polypeptide 58 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122869483, updated on 22-Mar-2024

Summary

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Gene symbol
dhx58
Gene description
DEXH (Asp-Glu-X-His) box polypeptide 58
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Also known as
LGP2
Orthologs
human zebrafish all
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Genomic context

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See dhx58 in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
12
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG21 NC_058062.1 (7156872..7161297, complement)

Linkage Group LG21 - NC_058062.1Genomic Context describing neighboring genes Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 7 Neighboring gene NFKB inhibitor interacting Ras-like 2 Neighboring gene zinc finger protein 385C Neighboring gene uncharacterized LOC122869488 Neighboring gene K(lysine) acetyltransferase 2A Neighboring gene RAB5C, member RAS oncogene family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058062.1 Chromosome LG21 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic analysis of Mandarin fish brain cells infected with infectious spleen and kidney necrosis virus with an emphasis on retinoic acid-inducible gene 1-like receptors and apoptosis pathways. Hu X, et al. Fish Shellfish Immunol, 2015 Aug. PMID 25982401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DHX58
Names
Dexd/H box RNA helicase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058062.1 Reference ASM2008510v1 Primary Assembly

    Range
    7156872..7161297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044182552.1 → XP_044038487.1  probable ATP-dependent RNA helicase DHX58

    UniProtKB/TrEMBL
    A0A2P1NRS3
    Conserved Domains (4) summary
    cd12090
    Location:230 → 347
    MDA5_ID; Insert domain of MDA5
    cl38915
    Location:350 → 485
    DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
    cl13152
    Location:554 → 668
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    cl28899
    Location:5 → 204
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
Heading Accession and Version

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