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irf3 interferon regulatory factor 3 [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122868143, updated on 22-Mar-2024

Summary

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Gene symbol
irf3
Gene description
interferon regulatory factor 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
zebrafish all
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Genomic context

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See irf3 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
11
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG20 NC_058061.1 (13867809..13874655, complement)

Linkage Group LG20 - NC_058061.1Genomic Context describing neighboring genes Neighboring gene sarcoplasmic reticulum histidine-rich calcium-binding protein Neighboring gene transient receptor potential cation channel subfamily M member 4-like Neighboring gene synembryn-A Neighboring gene proline rich 12a Neighboring gene BR serine/threonine kinase 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058061.1 Chromosome LG20 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Composition and transcription of all interferon regulatory factors (IRFs), IRF1‒11 in a perciform fish, the mandarin fish, Siniperca chuatsi. Laghari ZA, et al. Dev Comp Immunol, 2018 Apr. PMID 29180032
  2. Transcriptomic analysis of Mandarin fish brain cells infected with infectious spleen and kidney necrosis virus with an emphasis on retinoic acid-inducible gene 1-like receptors and apoptosis pathways. Hu X, et al. Fish Shellfish Immunol, 2015 Aug. PMID 25982401
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058061.1 Reference ASM2008510v1 Primary Assembly

    Range
    13867809..13874655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044179843.1 → XP_044035778.1  interferon regulatory factor 3 isoform X2

    UniProtKB/TrEMBL
    A0A0G2T6C7, A0A2L1DGM3
    Conserved Domains (2) summary
    pfam00605
    Location:8 → 104
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:263 → 441
    IRF-3; Interferon-regulatory factor 3

  2. XM_044179842.1 → XP_044035777.1  interferon regulatory factor 3 isoform X1

    UniProtKB/TrEMBL
    A0A0G2T6C7
    Conserved Domains (1) summary
    cd00103
    Location:5 → 104
    IRF; Interferon Regulatory Factor (IRF); also known as tryptophan pentad repeat. The family of IRF transcription factors is important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. The ...
Nucleotide Protein
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