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traf2b Tnf receptor-associated factor 2b [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122865199, updated on 12-Sep-2024

Summary

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Gene symbol
traf2b
Gene description
Tnf receptor-associated factor 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
zebrafish all
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Genomic context

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See traf2b in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
14
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG18 NC_058059.1 (11918498..11931037, complement)

Linkage Group LG18 - NC_058059.1Genomic Context describing neighboring genes Neighboring gene PR domain zinc finger protein 12-like Neighboring gene uncharacterized LOC122865632 Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene coenzyme Q4 homolog (S. cerevisiae) Neighboring gene B-box and SPRY domain containing Neighboring gene zinc finger, MYND-type containing 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058059.1 Chromosome LG18 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058059.1 Reference ASM2008510v1 Primary Assembly

    Range
    11918498..11931037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044173291.1 → XP_044029226.1  TNF receptor-associated factor 2 isoform X1

    Conserved Domains (3) summary
    cl02446
    Location:353 → 516
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl17238
    Location:28 → 68
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:174 → 231
    zf-TRAF; TRAF-type zinc finger

  2. XM_044173292.1 → XP_044029227.1  TNF receptor-associated factor 2 isoform X1

    Conserved Domains (3) summary
    cl02446
    Location:353 → 516
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl17238
    Location:28 → 68
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:174 → 231
    zf-TRAF; TRAF-type zinc finger

  3. XM_044173290.1 → XP_044029225.1  TNF receptor-associated factor 2 isoform X1

    Conserved Domains (3) summary
    cl02446
    Location:353 → 516
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl17238
    Location:28 → 68
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:174 → 231
    zf-TRAF; TRAF-type zinc finger

  4. XM_044173294.1 → XP_044029229.1  TNF receptor-associated factor 2 isoform X1

    Conserved Domains (3) summary
    cl02446
    Location:353 → 516
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl17238
    Location:28 → 68
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl40617
    Location:174 → 231
    zf-TRAF; TRAF-type zinc finger

  5. XM_044173295.1 → XP_044029230.1  TNF receptor-associated factor 2 isoform X2

    Conserved Domains (2) summary
    cl02446
    Location:253 → 416
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl40617
    Location:74 → 131
    zf-TRAF; TRAF-type zinc finger
Nucleotide Protein
Heading Accession and Version

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