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capn3b calpain 3b [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122863461, updated on 22-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
23
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG16 NC_058057.1 (18605843..18630163, complement)

Linkage Group LG16 - NC_058057.1Genomic Context describing neighboring genes Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058057.1 Chromosome LG16 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058057.1 Reference ASM2008510v1 Primary Assembly

    Range
    18605843..18630163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044169991.1 → XP_044025926.1  calpain-3b isoform X2

    Conserved Domains (4) summary
    smart00230
    Location:64 → 382
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:384 → 540
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:595 → 623
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:595 → 763
    EFh_PEF; The penta-EF hand (PEF) family

  2. XM_044169990.1 → XP_044025925.1  calpain-3b isoform X1

    Conserved Domains (4) summary
    smart00230
    Location:64 → 382
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:384 → 540
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:603 → 631
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:603 → 771
    EFh_PEF; The penta-EF hand (PEF) family

  3. XM_044169992.1 → XP_044025927.1  calpain-3b isoform X3

    Conserved Domains (4) summary
    smart00230
    Location:2 → 306
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:308 → 464
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:527 → 555
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:527 → 695
    EFh_PEF; The penta-EF hand (PEF) family

  4. XM_044169993.1 → XP_044025928.1  calpain-3b isoform X4

    Conserved Domains (3) summary
    cd15897
    Location:134 → 162
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:134 → 302
    EFh_PEF; The penta-EF hand (PEF) family
    cl00165
    Location:3 → 71
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

  5. XM_044169994.1 → XP_044025929.1  calpain-3b isoform X5

    Conserved Domains (2) summary
    cd15897
    Location:31 → 60
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:1 → 156
    EFh_PEF; The penta-EF hand (PEF) family

RNA

  1. XR_006375013.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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