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capn3a calpain 3a, (p94) [ Siniperca chuatsi (mandarin fish) ]

Gene ID: 122861776, updated on 22-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Gene type
protein coding
RefSeq status
MODEL
Organism
Siniperca chuatsi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Centrarchiformes; Centrarchoidei; Sinipercidae; Siniperca
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
21
Annotation release Status Assembly LG Location
100 current ASM2008510v1 (GCF_020085105.1) LG15 NC_058056.1 (23844921..23860812)

Linkage Group LG15 - NC_058056.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A-like Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058056.1 Chromosome LG15 Reference ASM2008510v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Siniperca chuatsi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2008510v1 Primary Assembly

Genomic

  1. NC_058056.1 Reference ASM2008510v1 Primary Assembly

    Range
    23844921..23860812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044166650.1 → XP_044022585.1  calpain-3 isoform X1

    Conserved Domains (4) summary
    smart00230
    Location:37 → 361
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:363 → 520
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 724
    EFh_PEF; The penta-EF hand (PEF) family

  2. XM_044166651.1 → XP_044022586.1  calpain-3 isoform X2

    Conserved Domains (4) summary
    smart00230
    Location:37 → 361
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:363 → 520
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 721
    EFh_PEF; The penta-EF hand (PEF) family

  3. XM_044166652.1 → XP_044022587.1  calpain-3 isoform X3

    Conserved Domains (4) summary
    smart00230
    Location:37 → 361
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:363 → 520
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 716
    EFh_PEF; The penta-EF hand (PEF) family

  4. XM_044166653.1 → XP_044022588.1  calpain-3 isoform X4

    Conserved Domains (4) summary
    smart00230
    Location:37 → 361
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:363 → 520
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 713
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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