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LOC122857547 lactosylceramide 4-alpha-galactosyltransferase-like [ Aphidius gifuensis ]

Gene ID: 122857547, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122857547
Gene description
lactosylceramide 4-alpha-galactosyltransferase-like
Locus tag
HCN44_009089
See related
EnsemblRapid:LOC122857547
Gene type
protein coding
RefSeq status
MODEL
Organism
Aphidius gifuensis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Ichneumonoidea; Braconidae; Aphidiinae; Aphidius
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Genomic context

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See LOC122857547 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
5
Annotation release Status Assembly LG Location
100 current ASM1490517v1 (GCF_014905175.1) LG5 NC_057792.1 (9671967..9730185)

Linkage Group LG5 - NC_057792.1Genomic Context describing neighboring genes Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 Neighboring gene uncharacterized LOC122856338 Neighboring gene uncharacterized LOC122857552 Neighboring gene uncharacterized LOC122856339 Neighboring gene uncharacterized LOC122856340

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057792.1 Chromosome LG5 Reference ASM1490517v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 4-alpha-galactosyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aphidius gifuensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1490517v1 Primary Assembly

Genomic

  1. NC_057792.1 Reference ASM1490517v1 Primary Assembly

    Range
    9671967..9730185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044159793.1 → XP_044015728.1  lactosylceramide 4-alpha-galactosyltransferase-like isoform X1

    UniProtKB/TrEMBL
    A0A834XR08
    Related
    XP_044015728.1, XM_044159793.1
    Conserved Domains (1) summary
    COG3774
    Location:121 → 151
    OCH1; Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis]

  2. XM_044159795.1 → XP_044015730.1  lactosylceramide 4-alpha-galactosyltransferase-like isoform X2

    Related
    XP_044015730.1, XM_044159795.1

  3. XM_044159796.1 → XP_044015731.1  lactosylceramide 4-alpha-galactosyltransferase-like isoform X3

    UniProtKB/TrEMBL
    A0A834XR08
    Related
    XP_044015731.1, XM_044159796.1
    Conserved Domains (1) summary
    COG3774
    Location:89 → 151
    OCH1; Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis]

  4. XM_044159797.1 → XP_044015732.1  lactosylceramide 4-alpha-galactosyltransferase-like isoform X4

    UniProtKB/TrEMBL
    A0A834XR08
    Related
    XP_044015732.1, XM_044159797.1
    Conserved Domains (1) summary
    COG3774
    Location:89 → 151
    OCH1; Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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