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ndst2a N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a [ Gambusia affinis (western mosquitofish) ]

Gene ID: 122842856, updated on 28-May-2024

Summary

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Gene symbol
ndst2a
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a
See related
EnsemblRapid:ENSGAFG00005015005
Gene type
protein coding
RefSeq status
MODEL
Organism
Gambusia affinis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
Orthologs
human zebrafish all
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Genomic context

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See ndst2a in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
17
Annotation release Status Assembly LG Location
100 current SWU_Gaff_1.0 (GCF_019740435.1) LG13 NC_057880.1 (3561461..3575074)

Linkage Group LG13 - NC_057880.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase I and III subunit C Neighboring gene zinc finger, SWIM-type containing 8 Neighboring gene uncharacterized LOC122842857 Neighboring gene family with sequence similarity 98 member A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057880.1 Chromosome LG13 Reference SWU_Gaff_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SWU_Gaff_1.0 Primary Assembly

Genomic

  1. NC_057880.1 Reference SWU_Gaff_1.0 Primary Assembly

    Range
    3561461..3575074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044137082.1 → XP_043993017.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A315VJG8

  2. XM_044137080.1 → XP_043993015.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A315VJG8
    Related
    ENSGAFP00005043710.1, ENSGAFT00005045608.1

  3. XM_044137081.1 → XP_043993016.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A315VJG8
    Related
    ENSGAFP00005043647.1, ENSGAFT00005045545.1

  4. XM_044137083.1 → XP_043993018.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A315VJG8
Nucleotide Protein
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