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LOC122834582 cytokine-inducible SH2-containing protein-like [ Gambusia affinis (western mosquitofish) ]

Gene ID: 122834582, updated on 28-May-2024

Summary

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Gene symbol
LOC122834582
Gene description
cytokine-inducible SH2-containing protein-like
See related
EnsemblRapid:ENSGAFG00005011243
Gene type
protein coding
RefSeq status
MODEL
Organism
Gambusia affinis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
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Genomic context

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See LOC122834582 in Genome Data Viewer
Location:
chromosome: LG07
Exon count:
3
Annotation release Status Assembly LG Location
100 current SWU_Gaff_1.0 (GCF_019740435.1) LG07 NC_057874.1 (10292228..10299370)

Linkage Group LG07 - NC_057874.1Genomic Context describing neighboring genes Neighboring gene mitochondrial RNA pseudouridine synthase rpusd4-like Neighboring gene WD repeat-containing protein 82-like Neighboring gene uncharacterized LOC122834584 Neighboring gene transforming protein RhoA Neighboring gene transmembrane protein 43

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057874.1 Chromosome LG07 Reference SWU_Gaff_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytokine-inducible SH2-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SWU_Gaff_1.0 Primary Assembly

Genomic

  1. NC_057874.1 Reference SWU_Gaff_1.0 Primary Assembly

    Range
    10292228..10299370
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044123138.1 → XP_043979073.1  cytokine-inducible SH2-containing protein-like

    Related
    ENSGAFP00005031259.1, ENSGAFT00005032641.1
    Conserved Domains (2) summary
    smart00969
    Location:176 → 209
    SOCS_box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases
    cd10718
    Location:43 → 130
    SH2_CIS; Src homology 2 (SH2) domain found in cytokine-inducible SH2-containing protein (CIS)
Nucleotide Protein
Heading Accession and Version

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