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hcfc1a host cell factor C1a [ Gambusia affinis (western mosquitofish) ]

Gene ID: 122833873, updated on 28-May-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
See related
EnsemblRapid:ENSGAFG00005009486
Gene type
protein coding
RefSeq status
MODEL
Organism
Gambusia affinis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
Orthologs
zebrafish all
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Genomic context

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See hcfc1a in Genome Data Viewer
Location:
chromosome: LG07
Exon count:
29
Annotation release Status Assembly LG Location
100 current SWU_Gaff_1.0 (GCF_019740435.1) LG07 NC_057874.1 (5420167..5438235)

Linkage Group LG07 - NC_057874.1Genomic Context describing neighboring genes Neighboring gene blue-sensitive opsin Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene uncharacterized LOC122833875 Neighboring gene uncharacterized LOC122833876 Neighboring gene GATA binding protein 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057874.1 Chromosome LG07 Reference SWU_Gaff_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SWU_Gaff_1.0 Primary Assembly

Genomic

  1. NC_057874.1 Reference SWU_Gaff_1.0 Primary Assembly

    Range
    5420167..5438235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044121817.1 → XP_043977752.1  host cell factor 1a isoform X1

    Conserved Domains (4) summary
    PLN02153
    Location:16 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1591 → 1620
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:675 → 849
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_044121820.1 → XP_043977755.1  host cell factor 1a isoform X2

    Related
    ENSGAFP00005026693.1, ENSGAFT00005027491.1
    Conserved Domains (3) summary
    PLN02153
    Location:16 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1562 → 1591
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]

  3. XM_044121818.1 → XP_043977753.1  host cell factor 1a isoform X1

    Related
    ENSGAFP00005026694.1, ENSGAFT00005027492.1
    Conserved Domains (4) summary
    PLN02153
    Location:16 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1591 → 1620
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:675 → 849
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_044121819.1 → XP_043977754.1  host cell factor 1a isoform X1

    Conserved Domains (4) summary
    PLN02153
    Location:16 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1591 → 1620
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:675 → 849
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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