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LOC122831770 plectin-like [ Gambusia affinis (western mosquitofish) ]

Gene ID: 122831770, updated on 28-May-2024

Summary

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Gene symbol
LOC122831770
Gene description
plectin-like
See related
EnsemblRapid:ENSGAFG00005006785
Gene type
protein coding
RefSeq status
MODEL
Organism
Gambusia affinis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
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Genomic context

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See LOC122831770 in Genome Data Viewer
Location:
chromosome: LG05
Exon count:
42
Annotation release Status Assembly LG Location
100 current SWU_Gaff_1.0 (GCF_019740435.1) LG05 NC_057872.1 (6672596..6818421)

Linkage Group LG05 - NC_057872.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene hepcidin-like Neighboring gene uncharacterized LOC122831775 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057872.1 Chromosome LG05 Reference SWU_Gaff_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SWU_Gaff_1.0 Primary Assembly

Genomic

  1. NC_057872.1 Reference SWU_Gaff_1.0 Primary Assembly

    Range
    6672596..6818421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044118205.1 → XP_043974140.1  plectin-like isoform X7

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (6) summary
    PTZ00121
    Location:1392 → 2110
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4341 → 4375
    PLEC; Plectin repeat
    COG0419
    Location:1003 → 1601
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:63 → 301
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:661 → 850
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:852 → 896
    SH3; Src Homology 3 domain superfamily

  2. XM_044118218.1 → XP_043974153.1  plectin-like isoform X19

    UniProtKB/TrEMBL
    A0A315W950
    Related
    ENSGAFP00005022427.1, ENSGAFT00005022985.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1388 → 2106
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4337 → 4371
    PLEC; Plectin repeat
    COG0419
    Location:999 → 1597
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:63 → 297
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:657 → 846
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:848 → 892
    SH3; Src Homology 3 domain superfamily

  3. XM_044118206.1 → XP_043974141.1  plectin-like isoform X8

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (6) summary
    PTZ00121
    Location:1376 → 2094
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4325 → 4359
    PLEC; Plectin repeat
    COG0419
    Location:987 → 1585
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:63 → 285
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:645 → 834
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:836 → 880
    SH3; Src Homology 3 domain superfamily

  4. XM_044118208.1 → XP_043974143.1  plectin-like isoform X10

    UniProtKB/TrEMBL
    A0A315W950
    Related
    ENSGAFP00005022425.1, ENSGAFT00005022983.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1367 → 2085
    PTZ00121; MAEBL; Provisional
    PRK02224
    Location:1151 → 1577
    PRK02224; DNA double-strand break repair Rad50 ATPase
    smart00250
    Location:4316 → 4350
    PLEC; Plectin repeat
    COG5069
    Location:63 → 285
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:645 → 834
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:836 → 880
    SH3; Src Homology 3 domain superfamily

  5. XM_044118210.1 → XP_043974145.1  plectin-like isoform X12

    UniProtKB/TrEMBL
    A0A315W950
    Related
    ENSGAFP00005022422.1, ENSGAFT00005022980.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1359 → 2077
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4308 → 4342
    PLEC; Plectin repeat
    COG0419
    Location:970 → 1568
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:35 → 268
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:628 → 817
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:819 → 863
    SH3; Src Homology 3 domain superfamily

  6. XM_044118213.1 → XP_043974148.1  plectin-like isoform X15

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (6) summary
    PTZ00121
    Location:1344 → 2062
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4293 → 4327
    PLEC; Plectin repeat
    COG0419
    Location:955 → 1553
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:20 → 253
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:613 → 802
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:804 → 848
    SH3; Src Homology 3 domain superfamily

  7. XM_044118199.1 → XP_043974134.1  plectin-like isoform X1

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (8) summary
    PTZ00121
    Location:2410 → 3128
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5359 → 5393
    PLEC; Plectin repeat
    COG0419
    Location:2021 → 2619
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1081 → 1319
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK08691
    Location:843 → 1020
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cd00176
    Location:1679 → 1868
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1870 → 1914
    SH3; Src Homology 3 domain superfamily

  8. XM_044118216.1 → XP_043974151.1  plectin-like isoform X17

    Conserved Domains (8) summary
    PTZ00121
    Location:500 → 956
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4256 → 4290
    PLEC; Plectin repeat
    COG0419
    Location:2021 → 2551
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1081 → 1319
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK08691
    Location:843 → 1020
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cd00176
    Location:1679 → 1868
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1870 → 1914
    SH3; Src Homology 3 domain superfamily

  9. XM_044118201.1 → XP_043974136.1  plectin-like isoform X3

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (8) summary
    PTZ00121
    Location:2401 → 3119
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5350 → 5384
    PLEC; Plectin repeat
    COG0419
    Location:2037 → 2610
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1081 → 1319
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK08691
    Location:843 → 1020
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cd00176
    Location:1679 → 1868
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1870 → 1914
    SH3; Src Homology 3 domain superfamily

  10. XM_044118217.1 → XP_043974152.1  plectin-like isoform X18

    Conserved Domains (7) summary
    PTZ00121
    Location:500 → 956
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4247 → 4281
    PLEC; Plectin repeat
    COG0419
    Location:2037 → 2542
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1081 → 1319
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1679 → 1868
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1870 → 1914
    SH3; Src Homology 3 domain superfamily

  11. XM_044118200.1 → XP_043974135.1  plectin-like isoform X2

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (8) summary
    PTZ00121
    Location:2406 → 3124
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5355 → 5389
    PLEC; Plectin repeat
    COG0419
    Location:2017 → 2615
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1081 → 1315
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK08691
    Location:843 → 1020
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cd00176
    Location:1675 → 1864
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1866 → 1910
    SH3; Src Homology 3 domain superfamily

  12. XM_044118202.1 → XP_043974137.1  plectin-like isoform X4

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (8) summary
    PTZ00121
    Location:2398 → 3116
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5347 → 5381
    PLEC; Plectin repeat
    COG0419
    Location:2009 → 2607
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1081 → 1307
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK08691
    Location:843 → 1020
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cd00176
    Location:1667 → 1856
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1858 → 1902
    SH3; Src Homology 3 domain superfamily

  13. XM_044118203.1 → XP_043974138.1  plectin-like isoform X5

    UniProtKB/TrEMBL
    A0A315W950
    Related
    ENSGAFP00005022421.1, ENSGAFT00005022979.1
    Conserved Domains (8) summary
    PTZ00121
    Location:2394 → 3112
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5343 → 5377
    PLEC; Plectin repeat
    COG0419
    Location:2005 → 2603
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1081 → 1303
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK08691
    Location:843 → 1020
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cd00176
    Location:1663 → 1852
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1854 → 1898
    SH3; Src Homology 3 domain superfamily

  14. XM_044118204.1 → XP_043974139.1  plectin-like isoform X6

    UniProtKB/TrEMBL
    A0A315W950
    Related
    ENSGAFP00005022127.1, ENSGAFT00005022685.1
    Conserved Domains (8) summary
    PTZ00121
    Location:2385 → 3103
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5334 → 5368
    PLEC; Plectin repeat
    COG0419
    Location:2021 → 2594
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1081 → 1303
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    PRK08691
    Location:843 → 1020
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cd00176
    Location:1663 → 1852
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl02102
    Location:5 → 97
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1854 → 1898
    SH3; Src Homology 3 domain superfamily

  15. XM_044118214.1 → XP_043974149.1  plectin-like isoform X16

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (6) summary
    PTZ00121
    Location:1334 → 2052
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4283 → 4317
    PLEC; Plectin repeat
    COG0419
    Location:945 → 1543
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:10 → 243
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:603 → 792
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:794 → 838
    SH3; Src Homology 3 domain superfamily

  16. XM_044118209.1 → XP_043974144.1  plectin-like isoform X11

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (6) summary
    PTZ00121
    Location:1362 → 2080
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4311 → 4345
    PLEC; Plectin repeat
    COG0419
    Location:973 → 1571
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:33 → 271
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:631 → 820
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:822 → 866
    SH3; Src Homology 3 domain superfamily

  17. XM_044118207.1 → XP_043974142.1  plectin-like isoform X9

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (6) summary
    PTZ00121
    Location:1370 → 2088
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4319 → 4353
    PLEC; Plectin repeat
    COG0419
    Location:981 → 1579
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:46 → 279
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:639 → 828
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:830 → 874
    SH3; Src Homology 3 domain superfamily

  18. XM_044118211.1 → XP_043974146.1  plectin-like isoform X13

    UniProtKB/TrEMBL
    A0A315W950
    Conserved Domains (6) summary
    PTZ00121
    Location:1354 → 2072
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4303 → 4337
    PLEC; Plectin repeat
    COG0419
    Location:965 → 1563
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:46 → 263
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:623 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:814 → 858
    SH3; Src Homology 3 domain superfamily

  19. XM_044118212.1 → XP_043974147.1  plectin-like isoform X14

    UniProtKB/TrEMBL
    A0A315W950
    Related
    ENSGAFP00005022036.1, ENSGAFT00005022594.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1345 → 2063
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4294 → 4328
    PLEC; Plectin repeat
    COG0419
    Location:981 → 1554
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:46 → 263
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:623 → 812
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl17036
    Location:814 → 858
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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