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LOC122827053 carbohydrate sulfotransferase 11-like [ Gambusia affinis (western mosquitofish) ]

Gene ID: 122827053, updated on 28-May-2024

Summary

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Gene symbol
LOC122827053
Gene description
carbohydrate sulfotransferase 11-like
See related
EnsemblRapid:ENSGAFG00005003119
Gene type
protein coding
RefSeq status
MODEL
Organism
Gambusia affinis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
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Genomic context

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See LOC122827053 in Genome Data Viewer
Location:
chromosome: LG01
Exon count:
4
Annotation release Status Assembly LG Location
100 current SWU_Gaff_1.0 (GCF_019740435.1) LG01 NC_057868.1 (18927409..18961077, complement)

Linkage Group LG01 - NC_057868.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122826721 Neighboring gene solute carrier family 41 member 1 Neighboring gene uncharacterized LOC122826755 Neighboring gene plexin-A1-like Neighboring gene plexin-A1-like Neighboring gene uncharacterized LOC122827245

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057868.1 Chromosome LG01 Reference SWU_Gaff_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SWU_Gaff_1.0 Primary Assembly

Genomic

  1. NC_057868.1 Reference SWU_Gaff_1.0 Primary Assembly

    Range
    18927409..18961077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044109639.1 → XP_043965574.1  carbohydrate sulfotransferase 11-like

    UniProtKB/TrEMBL
    A0A315W7A4
    Related
    ENSGAFP00005007786.1, ENSGAFT00005008204.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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