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LOC122824385 aspartyl/asparaginyl beta-hydroxylase-like [ Gambusia affinis (western mosquitofish) ]

Gene ID: 122824385, updated on 28-May-2024

Summary

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Gene symbol
LOC122824385
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
EnsemblRapid:ENSGAFG00005018026
Gene type
protein coding
RefSeq status
MODEL
Organism
Gambusia affinis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
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Genomic context

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See LOC122824385 in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
31
Annotation release Status Assembly LG Location
100 current SWU_Gaff_1.0 (GCF_019740435.1) LG21 NC_057888.1 (764569..785998, complement)

Linkage Group LG21 - NC_057888.1Genomic Context describing neighboring genes Neighboring gene clavesin-1-like Neighboring gene RIO kinase 3 (yeast) Neighboring gene sodium channel protein type 4 subunit alpha-like Neighboring gene uncharacterized LOC122824487 Neighboring gene NACHT, LRR and PYD domains-containing protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057888.1 Chromosome LG21 Reference SWU_Gaff_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like; calponin homology domain-containing protein DDB_G0272472-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SWU_Gaff_1.0 Primary Assembly

Genomic

  1. NC_057888.1 Reference SWU_Gaff_1.0 Primary Assembly

    Range
    764569..785998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044105004.1 → XP_043960939.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X8

    Conserved Domains (5) summary
    pfam05279
    Location:61 → 316
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:360 → 524
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:353 → 378
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:430 → 456
    TPR; TPR repeat [structural motif]
    cl40423
    Location:598 → 757
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_044105003.1 → XP_043960938.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X7

    Conserved Domains (5) summary
    pfam05279
    Location:61 → 323
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:367 → 531
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:360 → 385
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:437 → 463
    TPR; TPR repeat [structural motif]
    cl40423
    Location:605 → 764
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_044105006.1 → XP_043960941.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X10

    Conserved Domains (5) summary
    pfam05279
    Location:61 → 308
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:352 → 516
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:345 → 370
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:422 → 448
    TPR; TPR repeat [structural motif]
    cl40423
    Location:590 → 749
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_044105007.1 → XP_043960942.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X11

    Related
    ENSGAFP00005050946.1, ENSGAFT00005053410.1
    Conserved Domains (5) summary
    pfam05279
    Location:61 → 304
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:348 → 512
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:341 → 366
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:418 → 444
    TPR; TPR repeat [structural motif]
    cl40423
    Location:586 → 745
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_044105005.1 → XP_043960940.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X9

    Conserved Domains (5) summary
    pfam05279
    Location:61 → 311
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:355 → 519
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:348 → 373
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:425 → 451
    TPR; TPR repeat [structural motif]
    cl40423
    Location:593 → 752
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_044105012.1 → XP_043960947.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X16

    Related
    ENSGAFP00005050951.1, ENSGAFT00005053415.1
    Conserved Domains (5) summary
    pfam05279
    Location:24 → 239
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:283 → 447
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:276 → 301
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:353 → 379
    TPR; TPR repeat [structural motif]
    cl40423
    Location:521 → 680
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_044105008.1 → XP_043960943.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X12

    Related
    ENSGAFP00005050950.1, ENSGAFT00005053414.1
    Conserved Domains (5) summary
    pfam05279
    Location:24 → 286
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:330 → 494
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:323 → 348
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:400 → 426
    TPR; TPR repeat [structural motif]
    cl40423
    Location:568 → 727
    cupin_RmlC-like; RmlC-like cupin superfamily

  8. XM_044105009.1 → XP_043960944.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X13

    Conserved Domains (4) summary
    pfam05279
    Location:61 → 276
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:320 → 484
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:390 → 416
    TPR; TPR repeat [structural motif]
    cl40423
    Location:558 → 717
    cupin_RmlC-like; RmlC-like cupin superfamily

  9. XM_044105011.1 → XP_043960946.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X15

    Conserved Domains (5) summary
    pfam05279
    Location:61 → 261
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:305 → 469
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:298 → 323
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:375 → 401
    TPR; TPR repeat [structural motif]
    cl40423
    Location:543 → 702
    cupin_RmlC-like; RmlC-like cupin superfamily

  10. XM_044105010.1 → XP_043960945.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X14

    Related
    ENSGAFP00005050947.1, ENSGAFT00005053411.1
    Conserved Domains (5) summary
    pfam05279
    Location:61 → 252
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:308 → 472
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:301 → 326
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:378 → 404
    TPR; TPR repeat [structural motif]
    cl40423
    Location:546 → 705
    cupin_RmlC-like; RmlC-like cupin superfamily

  11. XM_044105014.1 → XP_043960949.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X18

    Conserved Domains (5) summary
    pfam05279
    Location:24 → 200
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:256 → 420
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:249 → 274
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:326 → 352
    TPR; TPR repeat [structural motif]
    cl40423
    Location:494 → 653
    cupin_RmlC-like; RmlC-like cupin superfamily

  12. XM_044105013.1 → XP_043960948.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X17

    Related
    ENSGAFP00005050948.1, ENSGAFT00005053412.1
    Conserved Domains (5) summary
    pfam05279
    Location:24 → 215
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    TIGR02917
    Location:271 → 435
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:264 → 289
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:341 → 367
    TPR; TPR repeat [structural motif]
    cl40423
    Location:509 → 668
    cupin_RmlC-like; RmlC-like cupin superfamily

  13. XM_044105001.1 → XP_043960936.1  calponin homology domain-containing protein DDB_G0272472-like isoform X5

    Conserved Domains (1) summary
    PTZ00121
    Location:110 → 816
    PTZ00121; MAEBL; Provisional

  14. XM_044105000.1 → XP_043960935.1  calponin homology domain-containing protein DDB_G0272472-like isoform X4

    Related
    ENSGAFP00005050944.1, ENSGAFT00005053408.1
    Conserved Domains (1) summary
    PTZ00121
    Location:125 → 831
    PTZ00121; MAEBL; Provisional

  15. XM_044105002.1 → XP_043960937.1  calponin homology domain-containing protein DDB_G0272472-like isoform X6

    Related
    ENSGAFP00005050942.1, ENSGAFT00005053406.1
    Conserved Domains (1) summary
    PTZ00121
    Location:162 → 868
    PTZ00121; MAEBL; Provisional

  16. XM_044104999.1 → XP_043960934.1  calponin homology domain-containing protein DDB_G0272472-like isoform X3

    Conserved Domains (1) summary
    PTZ00121
    Location:128 → 834
    PTZ00121; MAEBL; Provisional

  17. XM_044104998.1 → XP_043960933.1  calponin homology domain-containing protein DDB_G0272472-like isoform X2

    Conserved Domains (1) summary
    PTZ00121
    Location:143 → 849
    PTZ00121; MAEBL; Provisional

  18. XM_044104997.1 → XP_043960932.1  calponin homology domain-containing protein DDB_G0272472-like isoform X1

    Related
    ENSGAFP00005050943.1, ENSGAFT00005053407.1
    Conserved Domains (1) summary
    PTZ00121
    Location:147 → 853
    PTZ00121; MAEBL; Provisional
Nucleotide Protein
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