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trip6 thyroid hormone receptor interactor 6 [ Gambusia affinis (western mosquitofish) ]

Gene ID: 122820566, updated on 12-Sep-2024

Summary

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Gene symbol
trip6
Gene description
thyroid hormone receptor interactor 6
See related
EnsemblRapid:ENSGAFG00005004916
Gene type
protein coding
RefSeq status
MODEL
Organism
Gambusia affinis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Gambusia
Orthologs
human zebrafish all
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Genomic context

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See trip6 in Genome Data Viewer
Location:
chromosome: LG18
Exon count:
12
Annotation release Status Assembly LG Location
100 current SWU_Gaff_1.0 (GCF_019740435.1) LG18 NC_057885.1 (346378..354715)

Linkage Group LG18 - NC_057885.1Genomic Context describing neighboring genes Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 Neighboring gene uncharacterized LOC122820222 Neighboring gene solute carrier family 16 member 13 Neighboring gene BCL6B transcription repressor Neighboring gene Rho guanine nucleotide exchange factor 15b Neighboring gene uncharacterized LOC122820571 Neighboring gene zona pellucida protein AX 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057885.1 Chromosome LG18 Reference SWU_Gaff_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thyroid receptor-interacting protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gambusia affinis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SWU_Gaff_1.0 Primary Assembly

Genomic

  1. NC_057885.1 Reference SWU_Gaff_1.0 Primary Assembly

    Range
    346378..354715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044098118.1 → XP_043954053.1  thyroid receptor-interacting protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A315W0R8
    Related
    ENSGAFP00005013126.1, ENSGAFT00005013636.1
    Conserved Domains (4) summary
    cd09350
    Location:366 → 419
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09357
    Location:486 → 548
    LIM3_Zyxin_like; The third LIM domain of Zyxin-like family
    pfam03157
    Location:154 → 342
    Glutenin_hmw; High molecular weight glutenin subunit
    cl02475
    Location:426 → 485
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  2. XM_044098115.1 → XP_043954050.1  thyroid receptor-interacting protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A315W0R8
    Conserved Domains (4) summary
    cd09350
    Location:366 → 419
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09357
    Location:486 → 548
    LIM3_Zyxin_like; The third LIM domain of Zyxin-like family
    pfam03157
    Location:154 → 342
    Glutenin_hmw; High molecular weight glutenin subunit
    cl02475
    Location:426 → 485
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  3. XM_044098116.1 → XP_043954051.1  thyroid receptor-interacting protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A315W0R8
    Conserved Domains (4) summary
    cd09350
    Location:365 → 418
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09357
    Location:485 → 547
    LIM3_Zyxin_like; The third LIM domain of Zyxin-like family
    pfam03157
    Location:154 → 341
    Glutenin_hmw; High molecular weight glutenin subunit
    cl02475
    Location:425 → 484
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  4. XM_044098117.1 → XP_043954052.1  thyroid receptor-interacting protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A315W0R8
    Conserved Domains (4) summary
    cd09350
    Location:366 → 419
    LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
    cd09357
    Location:486 → 548
    LIM3_Zyxin_like; The third LIM domain of Zyxin-like family
    pfam03157
    Location:154 → 342
    Glutenin_hmw; High molecular weight glutenin subunit
    cl02475
    Location:426 → 485
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
Heading Accession and Version

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