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LOC122817706 mucin-16-like [ Protopterus annectens (West African lungfish) ]

Gene ID: 122817706, updated on 7-Dec-2023

Summary

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Gene symbol
LOC122817706
Gene description
mucin-16-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
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Genomic context

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See LOC122817706 in Genome Data Viewer
Location:
chromosome: 13.part0
Exon count:
73
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 13.part0 NC_056747.1 (203770013..204031453)

Chromosome 13.part0 - NC_056747.1Genomic Context describing neighboring genes Neighboring gene ornithine decarboxylase antizyme 1 Neighboring gene PEAK family member 3 Neighboring gene mucin-16-like Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene mucin-17-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056747.1 Chromosome 13.part0 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mucin-16-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056747.1 Reference PAN1.0 Primary Assembly

    Range
    203770013..204031453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044090777.1 → XP_043946712.1  mucin-16-like isoform X1

    Conserved Domains (5) summary
    PLN02217
    Location:1601 → 1721
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:2475 → 2562
    COG3889; Predicted periplasmic protein [Function unknown]
    TIGR03835
    Location:5756 → 6052
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:5037 → 5403
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02507
    Location:14543 → 14661
    SEA; SEA domain

  2. XM_044090778.1 → XP_043946713.1  mucin-16-like isoform X2

    Conserved Domains (5) summary
    PLN02217
    Location:1601 → 1721
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:2475 → 2562
    COG3889; Predicted periplasmic protein [Function unknown]
    TIGR03835
    Location:5756 → 6052
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:5037 → 5403
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02507
    Location:14542 → 14660
    SEA; SEA domain

  3. XM_044090780.1 → XP_043946715.1  mucin-16-like isoform X4

    Conserved Domains (5) summary
    PLN02217
    Location:1601 → 1721
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:2475 → 2562
    COG3889; Predicted periplasmic protein [Function unknown]
    TIGR03835
    Location:5756 → 6052
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:5037 → 5403
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02507
    Location:14542 → 14660
    SEA; SEA domain

  4. XM_044090781.1 → XP_043946716.1  mucin-16-like isoform X5

    Conserved Domains (5) summary
    PLN02217
    Location:1601 → 1721
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:2475 → 2562
    COG3889; Predicted periplasmic protein [Function unknown]
    TIGR03835
    Location:5756 → 6052
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:5037 → 5403
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02507
    Location:14542 → 14660
    SEA; SEA domain

  5. XM_044090779.1 → XP_043946714.1  mucin-16-like isoform X3

    Conserved Domains (5) summary
    PLN02217
    Location:1601 → 1721
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:2475 → 2562
    COG3889; Predicted periplasmic protein [Function unknown]
    TIGR03835
    Location:5756 → 6052
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:5037 → 5403
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02507
    Location:14542 → 14660
    SEA; SEA domain

  6. XM_044090782.1 → XP_043946717.1  mucin-16-like isoform X6

    Conserved Domains (5) summary
    PLN02217
    Location:1601 → 1721
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:2475 → 2562
    COG3889; Predicted periplasmic protein [Function unknown]
    TIGR03835
    Location:5756 → 6052
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:5037 → 5403
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02507
    Location:14269 → 14387
    SEA; SEA domain

  7. XM_044090783.1 → XP_043946718.1  mucin-16-like isoform X7

    Conserved Domains (7) summary
    PLN02217
    Location:1601 → 1721
    PLN02217; probable pectinesterase/pectinesterase inhibitor
    COG3889
    Location:2475 → 2562
    COG3889; Predicted periplasmic protein [Function unknown]
    PRK11907
    Location:5524 → 5623
    PRK11907; bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
    PRK14949
    Location:2306 → 2735
    PRK14949; DNA polymerase III subunits gamma and tau; Provisional
    TIGR03835
    Location:5756 → 6052
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:5037 → 5403
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02507
    Location:11410 → 11528
    SEA; SEA domain
Nucleotide Protein
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