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THBS3 thrombospondin 3 [ Protopterus annectens (West African lungfish) ]

Gene ID: 122809012, updated on 22-Mar-2024

Summary

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Gene symbol
THBS3
Gene description
thrombospondin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8.part0
Exon count:
24
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 8.part0 NC_056741.1 (743852525..744801168, complement)

Chromosome 8.part0 - NC_056741.1Genomic Context describing neighboring genes Neighboring gene synaptophysin Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2-like Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene metaxin 1 Neighboring gene glucosylceramidase beta 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056741.1 Chromosome 8.part0 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056741.1 Reference PAN1.0 Primary Assembly

    Range
    743852525..744801168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044080201.1 → XP_043936136.1  thrombospondin-3 isoform X1

    Conserved Domains (9) summary
    cd00054
    Location:324 → 358
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    sd00001
    Location:536 → 558
    TSP3; TSP3 repeat_short [structural motif]
    sd00002
    Location:559 → 594
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:465 → 499
    TSP3_1C; TSP3 repeat_1C [structural motif]
    cd16076
    Location:238 → 277
    TSPcc; coiled coil [structural motif]
    pfam02412
    Location:559 → 594
    TSP_3; Thrombospondin type 3 repeat
    NF000535
    Location:470 → 660
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cl13107
    Location:235 → 277
    TSPcc; Coiled coil region of thrombospondin
    cl22861
    Location:29 → 201
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_044080202.1 → XP_043936137.1  thrombospondin-3 isoform X2

    Conserved Domains (9) summary
    cd00054
    Location:324 → 358
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    sd00001
    Location:536 → 558
    TSP3; TSP3 repeat_short [structural motif]
    sd00002
    Location:559 → 594
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:465 → 499
    TSP3_1C; TSP3 repeat_1C [structural motif]
    cd16076
    Location:238 → 277
    TSPcc; coiled coil [structural motif]
    pfam02412
    Location:559 → 594
    TSP_3; Thrombospondin type 3 repeat
    NF000535
    Location:470 → 660
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cl13107
    Location:235 → 277
    TSPcc; Coiled coil region of thrombospondin
    cl22861
    Location:29 → 201
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
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