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LRTM1 leucine rich repeats and transmembrane domains 1 [ Protopterus annectens (West African lungfish) ]

Gene ID: 122807645, updated on 22-Mar-2024

Summary

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Gene symbol
LRTM1
Gene description
leucine rich repeats and transmembrane domains 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
Orthologs
human mouse all
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Genomic context

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See LRTM1 in Genome Data Viewer
Location:
chromosome: 7.part1
Exon count:
3
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 7.part1 NC_056740.1 (103755425..103911237, complement)

Chromosome 7.part1 - NC_056740.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon CAA) Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 3 Neighboring gene uncharacterized LOC122807527 Neighboring gene uncharacterized LOC122807528

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056740.1 Chromosome 7.part1 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056740.1 Reference PAN1.0 Primary Assembly

    Range
    103755425..103911237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044078575.1 → XP_043934510.1  leucine-rich repeat and transmembrane domain-containing protein 1

    Conserved Domains (4) summary
    TIGR00864
    Location:153 → 237
    PCC; polycystin cation channel protein
    smart00013
    Location:20 → 53
    LRRNT; Leucine rich repeat N-terminal domain
    PLN00113
    Location:42 → 180
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:52 → 75
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
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