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TENM2 teneurin transmembrane protein 2 [ Protopterus annectens (West African lungfish) ]

Gene ID: 122800078, updated on 22-Mar-2024

Summary

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Gene symbol
TENM2
Gene description
teneurin transmembrane protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
Orthologs
human mouse all
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Genomic context

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See TENM2 in Genome Data Viewer
Location:
chromosome: 4.part0
Exon count:
31
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 4.part0 NC_056733.1 (1969079923..1970850579)

Chromosome 4.part0 - NC_056733.1Genomic Context describing neighboring genes Neighboring gene teneurin-2-like Neighboring gene uncharacterized LOC122800207 Neighboring gene forkhead box I1 Neighboring gene MRN complex interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056733.1 Chromosome 4.part0 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
teneurin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056733.1 Reference PAN1.0 Primary Assembly

    Range
    1969079923..1970850579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044069584.1 → XP_043925519.1  teneurin-2 isoform X1

    Conserved Domains (5) summary
    COG3209
    Location:1713 → 2321
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd00054
    Location:560 → 589
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1120 → 1159
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1120 → 1450
    NHL; NHL repeat unit of beta-propeller proteins
    pfam01500
    Location:527 → 665
    Keratin_B2; Keratin, high sulfur B2 protein

  2. XM_044069586.1 → XP_043925521.1  teneurin-2 isoform X3

    Conserved Domains (5) summary
    COG3209
    Location:1672 → 2280
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd00054
    Location:519 → 548
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1079 → 1118
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1079 → 1409
    NHL; NHL repeat unit of beta-propeller proteins
    pfam01500
    Location:486 → 624
    Keratin_B2; Keratin, high sulfur B2 protein

  3. XM_044069585.1 → XP_043925520.1  teneurin-2 isoform X2

    Conserved Domains (5) summary
    COG3209
    Location:1702 → 2310
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd00054
    Location:549 → 578
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1109 → 1148
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1109 → 1439
    NHL; NHL repeat unit of beta-propeller proteins
    pfam01500
    Location:516 → 654
    Keratin_B2; Keratin, high sulfur B2 protein

  4. XM_044069588.1 → XP_043925523.1  teneurin-2 isoform X5

    Conserved Domains (5) summary
    COG3209
    Location:1661 → 2269
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd00054
    Location:508 → 537
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1068 → 1107
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1068 → 1398
    NHL; NHL repeat unit of beta-propeller proteins
    pfam01500
    Location:475 → 613
    Keratin_B2; Keratin, high sulfur B2 protein

  5. XM_044069587.1 → XP_043925522.1  teneurin-2 isoform X4

    Conserved Domains (5) summary
    COG3209
    Location:1670 → 2278
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd00054
    Location:517 → 546
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1077 → 1116
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1077 → 1407
    NHL; NHL repeat unit of beta-propeller proteins
    pfam01500
    Location:484 → 622
    Keratin_B2; Keratin, high sulfur B2 protein
Nucleotide Protein
Heading Accession and Version

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