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CSPG5 chondroitin sulfate proteoglycan 5 [ Protopterus annectens (West African lungfish) ]

Gene ID: 122797196, updated on 22-Mar-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Protopterus annectens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Dipnomorpha; Ceratodontiformes; Lepidosirenoidei; Protopteridae; Protopterus
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: 3.part0
Exon count:
5
Annotation release Status Assembly Chr Location
100 current PAN1.0 (GCF_019279795.1) 3.part0 NC_056731.1 (1936893595..1937888030, complement)

Chromosome 3.part0 - NC_056731.1Genomic Context describing neighboring genes Neighboring gene SREBF chaperone Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene uncharacterized LOC122797197 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056731.1 Chromosome 3.part0 Reference PAN1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salamander-like tail regeneration in the West African lungfish. Verissimo KM, et al. Proc Biol Sci, 2020 Sep 30. PMID 32933441, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Protopterus annectens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAN1.0 Primary Assembly

Genomic

  1. NC_056731.1 Reference PAN1.0 Primary Assembly

    Range
    1936893595..1937888030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044066023.1 → XP_043921958.1  chondroitin sulfate proteoglycan 5 isoform X3

    Conserved Domains (2) summary
    pfam06566
    Location:394 → 475
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:643 → 735
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain

  2. XM_044066022.1 → XP_043921957.1  chondroitin sulfate proteoglycan 5 isoform X2

    Conserved Domains (2) summary
    pfam06566
    Location:394 → 475
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:643 → 761
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain

  3. XM_044066021.1 → XP_043921956.1  chondroitin sulfate proteoglycan 5 isoform X1

    Conserved Domains (2) summary
    pfam06566
    Location:394 → 475
    Chon_Sulph_att; Chondroitin sulphate attachment domain
    pfam06567
    Location:643 → 762
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
Nucleotide Protein
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