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LOC122785122 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122785122, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122785122
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
Locus tag
JOB18_025372
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
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Genomic context

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See LOC122785122 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
13
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG19 NC_058038.1 (18834617..18842117)

Linkage Group LG19 - NC_058038.1Genomic Context describing neighboring genes Neighboring gene nuclear protein 1b Neighboring gene NAD-dependent protein deacetylase HST1-like Neighboring gene uncharacterized LOC122785128 Neighboring gene uncharacterized LOC122785127 Neighboring gene uncharacterized LOC122785126 Neighboring gene UTP18 small subunit processome component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058038.1 Chromosome LG19 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058038.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    18834617..18842117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044050759.1 → XP_043906694.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:68 → 338
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_044050758.1 → XP_043906693.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:68 → 338
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_044050760.1 → XP_043906695.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X2

    Conserved Domains (1) summary
    cl11394
    Location:49 → 319
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_044050761.1 → XP_043906696.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like isoform X3

    Conserved Domains (1) summary
    cl11394
    Location:33 → 303
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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