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xylt2 xylosyltransferase II [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122785055, updated on 12-Sep-2024

Summary

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Gene symbol
xylt2
Gene description
xylosyltransferase II
Locus tag
JOB18_030462
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
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Genomic context

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See xylt2 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
11
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG19 NC_058038.1 (14166425..14179126)

Linkage Group LG19 - NC_058038.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM69 Neighboring gene uncharacterized si:ch73-364h19.1 Neighboring gene uncharacterized LOC122784879 Neighboring gene NHERF family PDZ scaffold protein 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058038.1 Chromosome LG19 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058038.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    14166425..14179126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044050651.1 → XP_043906586.1  xylosyltransferase 2

    Conserved Domains (1) summary
    cl27418
    Location:251 → 544
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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