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capn3a calpain 3a, (p94) [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122783338, updated on 22-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Locus tag
JOB18_015891
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG16
Exon count:
21
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG16 NC_058036.1 (20924510..20943206, complement)

Linkage Group LG16 - NC_058036.1Genomic Context describing neighboring genes Neighboring gene proton activated chloride channel 1 Neighboring gene zinc finger protein 106a Neighboring gene dishevelled associated activator of morphogenesis 2 Neighboring gene kinesin family member 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058036.1 Chromosome LG16 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058036.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    20924510..20943206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044048074.1 → XP_043904009.1  calpain-3 isoform X2

    Conserved Domains (4) summary
    smart00230
    Location:37 → 359
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:361 → 518
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:543 → 571
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:543 → 710
    EFh_PEF; The penta-EF hand (PEF) family

  2. XM_044048073.1 → XP_043904008.1  calpain-3 isoform X1

    Conserved Domains (4) summary
    smart00230
    Location:37 → 359
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:361 → 518
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:543 → 571
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:543 → 713
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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