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b3gnt5a UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5a [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122781213, updated on 2-May-2024

Summary

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Gene symbol
b3gnt5a
Gene description
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5a
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
zebrafish all
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Genomic context

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See b3gnt5a in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
2
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG14 NC_058034.1 (1461682..1469962)

Linkage Group LG14 - NC_058034.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 183A Neighboring gene epithelial cell transforming 2 Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene uncharacterized LOC122781214 Neighboring gene basic immunoglobulin-like variable motif-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058034.1 Chromosome LG14 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058034.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    1461682..1469962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044044787.1 → XP_043900722.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A

    Conserved Domains (1) summary
    cl21608
    Location:114 → 309
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases