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LOC122780483 aspartyl/asparaginyl beta-hydroxylase-like [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122780483, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122780483
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Locus tag
JOB18_030792
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC122780483 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
23
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG1 NC_058021.1 (34774226..34788200)

Linkage Group LG1 - NC_058021.1Genomic Context describing neighboring genes Neighboring gene drosha ribonuclease III Neighboring gene cadherin-6-like Neighboring gene uncharacterized LOC122769530 Neighboring gene clavesin-1-like Neighboring gene RIO kinase 3 (yeast) Neighboring gene ras responsive element binding protein 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058021.1 Chromosome LG1 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like
Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058021.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    34774226..34788200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044043497.1 → XP_043899432.1  aspartyl/asparaginyl beta-hydroxylase-like

    Conserved Domains (4) summary
    PRK03427
    Location:15 → 162
    PRK03427; cell division protein ZipA; Provisional
    TIGR02917
    Location:193 → 343
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:274 → 300
    TPR; TPR repeat [structural motif]
    cl40423
    Location:442 → 601
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases