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LOC122779966 polypeptide N-acetylgalactosaminyltransferase 10-like [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122779966, updated on 30-Nov-2023

Summary

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Gene symbol
LOC122779966
Gene description
polypeptide N-acetylgalactosaminyltransferase 10-like
Locus tag
JOB18_037779
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
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Genomic context

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See LOC122779966 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
14
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG13 NC_058033.1 (7390602..7438090, complement)

Linkage Group LG13 - NC_058033.1Genomic Context describing neighboring genes Neighboring gene sap30-like Neighboring gene polypeptide N-acetylgalactosaminyltransferase 10 Neighboring gene microfibrillar-associated protein 3-like Neighboring gene family with sequence similarity 114 member A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058033.1 Chromosome LG13 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058033.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    7390602..7438090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044042710.1 → XP_043898645.1  polypeptide N-acetylgalactosaminyltransferase 10-like

    Conserved Domains (2) summary
    cd02510
    Location:149 → 444
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:462 → 590
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
Heading Accession and Version

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