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ogt.1 O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122778374, updated on 22-Mar-2024

Summary

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Gene symbol
ogt.1
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1
Locus tag
JOB18_016410
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
zebrafish all
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Genomic context

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See ogt.1 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
24
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG12 NC_058032.1 (12204200..12217022)

Linkage Group LG12 - NC_058032.1Genomic Context describing neighboring genes Neighboring gene ras homolog gene family, member Gd Neighboring gene FH2 domain containing 2 Neighboring gene germ cell nuclear acidic peptidase Neighboring gene centrin, EF-hand protein, 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058032.1 Chromosome LG12 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Names
UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058032.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    12204200..12217022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044040198.1 → XP_043896133.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    Conserved Domains (3) summary
    COG3914
    Location:345 → 1052
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:31 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]

  2. XM_044040199.1 → XP_043896134.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    Conserved Domains (3) summary
    COG3914
    Location:345 → 1047
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:31 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]

  3. XM_044040204.1 → XP_043896139.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X6

    Conserved Domains (3) summary
    COG3914
    Location:345 → 1036
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:31 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]

  4. XM_044040205.1 → XP_043896140.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X7

    Conserved Domains (3) summary
    COG3914
    Location:345 → 1031
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:31 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]

  5. XM_044040201.1 → XP_043896136.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3

    Conserved Domains (3) summary
    COG3914
    Location:345 → 1046
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:31 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]

  6. XM_044040203.1 → XP_043896138.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X5

    Conserved Domains (3) summary
    COG3914
    Location:345 → 1041
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:31 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]

  7. XM_044040207.1 → XP_043896142.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X9

    Conserved Domains (3) summary
    COG3914
    Location:345 → 1030
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:31 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]

  8. XM_044040202.1 → XP_043896137.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X4

    Conserved Domains (3) summary
    COG3914
    Location:335 → 1042
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:21 → 450
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]

  9. XM_044040206.1 → XP_043896141.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X8

    Conserved Domains (3) summary
    COG3914
    Location:335 → 1031
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:21 → 450
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]

  10. XM_044040208.1 → XP_043896143.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X10

    Conserved Domains (3) summary
    COG3914
    Location:345 → 1025
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:31 → 460
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:293 → 321
    TPR; TPR repeat [structural motif]

  11. XM_044040209.1 → XP_043896144.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X11

    Conserved Domains (3) summary
    COG3914
    Location:335 → 1015
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    TIGR02917
    Location:21 → 450
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]

  12. XM_044040210.1 → XP_043896145.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X12

    Conserved Domains (3) summary
    COG0457
    Location:28 → 285
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:169 → 876
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:117 → 145
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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