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exosc3 exosome component 3 [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122778198, updated on 11-Apr-2024

Summary

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Gene symbol
exosc3
Gene description
exosome component 3
Locus tag
JOB18_029929
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
zebrafish all
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Genomic context

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See exosc3 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
5
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG12 NC_058032.1 (1742097..1751716)

Linkage Group LG12 - NC_058032.1Genomic Context describing neighboring genes Neighboring gene RE1-silencing transcription factor Neighboring gene DP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1, like Neighboring gene transforming growth factor, beta-induced Neighboring gene StAR-related lipid transfer (START) domain containing 15 Neighboring gene arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058032.1 Chromosome LG12 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CUT catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058032.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    1742097..1751716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044039836.1 → XP_043895771.1  exosome complex component RRP40

    Conserved Domains (2) summary
    COG1097
    Location:5 → 241
    Rrp4; Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Translation, ribosomal structure and biogenesis]
    cd05790
    Location:75 → 155
    S1_Rrp40; Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
Nucleotide Protein
Heading Accession and Version

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