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hcfc1b host cell factor C1b [ Solea senegalensis (Senegalese sole) ]

Gene ID: 122776734, updated on 22-Mar-2024

Summary

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Gene symbol
hcfc1b
Gene description
host cell factor C1b
Locus tag
JOB18_049032
Gene type
protein coding
RefSeq status
MODEL
Organism
Solea senegalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Soleidae; Solea
Orthologs
zebrafish all
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Genomic context

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See hcfc1b in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
32
Annotation release Status Assembly LG Location
100 current IFAPA_SoseM_1 (GCF_019176455.1) LG11 NC_058031.1 (24088055..24101212, complement)

Linkage Group LG11 - NC_058031.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family D (ALD), member 1 Neighboring gene coiled-coil domain containing 120a Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene methyl CpG binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_058031.1 Chromosome LG11 Reference IFAPA_SoseM_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1b
Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solea senegalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IFAPA_SoseM_1 Primary Assembly

Genomic

  1. NC_058031.1 Reference IFAPA_SoseM_1 Primary Assembly

    Range
    24088055..24101212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044037407.1 → XP_043893342.1  host cell factor 1b

    Conserved Domains (4) summary
    PRK14708
    Location:595 → 853
    PRK14708; flagellin; Provisional
    PLN02153
    Location:6 → 332
    PLN02153; epithiospecifier protein
    cd00063
    Location:1431 → 1460
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:194 → 245
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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